

Study with the several resources on Docsity
Earn points by helping other students or get them with a premium plan
Prepare for your exams
Study with the several resources on Docsity
Earn points to download
Earn points by helping other students or get them with a premium plan
Community
Ask the community for help and clear up your study doubts
Discover the best universities in your country according to Docsity users
Free resources
Download our free guides on studying techniques, anxiety management strategies, and thesis advice from Docsity tutors
Explanations for various code words used in multiple equilibrium problems, including langmuir (an equation and binding scheme for ligand-receptor interaction), adair (a general multiple-site binding scheme and equation), hill (a perfectly cooperative binding model, equation, and plot), and monod-wyman-changeux (a cooperativity scheme for protein subunits).
What you will learn
Typology: Study notes
1 / 3
This page cannot be seen from the preview
Don't miss anything!
Code words for equations, scheme, and plots in multiple equilibrium problems
During the course of the linkage section, you are exposed to a large number of “names” associated with various chemical schemes, equations that emerge from them, and ways to plot these equations. These can be very confusing the first time around. So here is a list of the various names used in the course, and what, exactly, they refer to.
Langmuir
This is a code-word for two things – an equation and a binding-scheme. A “Langmuir binding scheme” is the simplest kind of binding of a ligand (X) to a receptor (R) to form a complex (RX):
X + R => RX Langmuir binding scheme
If you solve this scheme for the fraction of the receptor in the ligand-bound form as a function of free X, you get:
f(x) = Kx/(1+Kx) Langmuir equation
Adair This is a code-word for a general multiple-site binding scheme and for the equation that emerges from it. The scheme envisions a macromolecule with N sites at which a single ligand, X, can bind. Each binding step (for the first ligand, the second ligand, etc) has its own equilibrium constant: K 1 K 2 KN Po – PX 1 — PX 2 — ::::: PX(N-1) — PXN Adair binding scheme
This scheme leads to an equation for the average number of sites bound as a function of ligand concentration:
Adair equation
Hill This code-word refers to four things – a “perfectly cooperative” binding model, an equation emerging from that model, a way to plot various kinds of data as a function of ligand concentration, and a quantitative feature of this plot.
Po — PN Hill binding model Hill equation
A plot of log[</(<max-<)] vs log(x) is called a Hill plot
Here are a linear and a Hill plot of the Hill equation, with n=1 or n=4:
The slope on a Hill plot, nH , is called the Hill coefficient.
Monod-Wyman-Changeux (MWC) This code-word refers to a particular scheme for cooperativity: Lo K 1 K 2 .... To — Ro – RX 1 – RX 2 — RX 3 — .... RXN , where the following assumptions hold: